CDS

Accession Number TCMCG066C20351
gbkey CDS
Protein Id XP_034596476.1
Location complement(join(31339211..31339467,31339627..31339759,31339839..31340357,31341230..31341463,31341630..31341909,31341981..31343767,31345139..31345204,31345277..31345402,31345482..31345880,31345959..31346140,31346268..31346401,31347270..31347772,31348037..31348519,31348934..31349195,31349278..31349418,31349516..31349702,31350318..31350648,31350720..31350948,31351048..31351240,31351333..31351685,31351779..31351853,31351967..31352171,31352266..31352466,31352861..31353046,31353404..31353510,31353706..31353779,31353858..31353936,31354246..31354290,31355143..31355300,31357128..31357250,31357331..31357399))
Gene LOC117857748
GeneID 117857748
Organism Setaria viridis

Protein

Length 2706aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA633601
db_source XM_034740585.1
Definition small subunit processome component 20 homolog [Setaria viridis]

EGGNOG-MAPPER Annotation

COG_category V
Description Down-regulated in metastasis
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko03009        [VIEW IN KEGG]
KEGG_ko ko:K14772        [VIEW IN KEGG]
EC -
KEGG_Pathway -
GOs -

Sequence

CDS:  
ATGGCGACCCCGTCGCACGCGGCGGTGAAGTGCCTCAACACGTGCGCGTCCAGCCGCAAGCGCTTCTCGTTCAAGACCTTCTCGCAGCGGGTGGAGGAGATCGACATCGATGTGTACCGCAGCCTACACGCTGTGAAGGCCGAGCCCTCCAGCGGCTCGTCCTTCTTCCTCGACGCCCTCATGGAGTGGAGGGAGCTTAATACTGCAGAGGATTTTATCTCATTTTATGAGGAGATGATACCATTGGTACAGACCCTACCTCAAATTGTATTGCACCGTGAAAAGCTCTTTTCTGCGCTTCTACTGAGAGTGAACATGAGTGCGAGATTGTCCCTGGAGCCAATACTCATGTTGATCACAGCTCTCTCCAGGGACATTCTAGAAGATTTTTTGCCCTTTCTAGGAAGACATGCTAATGGCATTTTAGCTCTCCTTAATGATGGTGGTGATCGTGATCCTGAAGTCCTGGAACAGGTCTTCACATCTTGGTCATATATAATGATGTACTTGCAAAAATATCTTGTGAAAGATATTGTCCAAATTCTAAGGATCACAGCAGCGTTGAGATACTACCCAAAGGATTATGTTAGAGAATTTATGGCTGAATCAGTTTCATTTCTGCTGAGGAATGCACCTAATAATCAGCTAACACAAGGTTTAATGAAGTTTCTATTTGAGGCTGCTAAAAAATCATCACCTGTACGGATAGACGGGGTGATATCTTTGTTGTTGCATGTCATGAAAGGAACTTCTACAAAGCTCCACTCAAGAGCTGGGAAAGTCTTGAAGTTCTTGTTGAGCAAGTCAACTTTTACCACTATCCATGATAAATTCCCTACTGGGACTTCTACTGTTCATGAGGTCATGACGGGGCTGATTCAAAGATTATGTGATGAAGTGGATCCAAAAGAATTGCCGTTGATATATACTTGTCTATTTGAAGAAATCAACGACTGCCTTAAGGATGGCTGTTTGGAGCATTTGAAGTGCTTGATTGATTTTCTTTCATTTGCTTTACATAAGAACCAAAGCAATGTGTTCGATAAGGTGAAGATAATTGAACTTGTTGAGTTGCTGGTTAGTAGATATGTGTTACCTGGTAACAACATAGTAGAAGCTGCTTCATCTGAGGTGCTGGGAAGTATTTTGGACTTTCTGCTGTGTGTTCTGGATGTTCCAATCATTTCTGGCAATTTATCAATCGTATCACCCTTTTATGTCCCAGTGTTTGAACTAACGAATCTGAGTGTGATTGTCTTTATAAAGAAACTTTTGGCAAAAGGTCCACAAATTACACAATATTTTGAAAGCCAGATATTGAGTGCAATGTGCAATTTTCTTTCAAGTTCACCGGAAGAAGTTCTCTTTATCCTTCTGAATTTCTTTAAAGGATCACAGAAGCAAATAATTCTTCATAGCACTGATGCAAACCATCTGGATTCAGTGGAGAAAGTGTGCAAGTTCTGTGAATCGAAATTCTCTTTCTGGATAGAATTCTTAGATGATACAGTCAACATTTCCAATCAATCTAGTAATCAGATCAGTGAAAAGGAAGCTGCTATACTGTGGGGATCTATTTGTTGCTATCCTTACATAAATGGTGTACGTCAAGATGGTTTGTCACTGTTGAAGAAGTTAATCTGCAACTTCGATCGGTTGCTTGAAGTGGGAGAAGAGAACGTGAATGGTCTTCCAATGACTACCTGGAGAGGTTTAATTGGTGCAGCATTGTCATCATACTGTGAACTTTTGCTGGTTAACACAAATATAAATTCAGAATTAAGTTTTTTCATATCACTTGCCAAGAGTCACAGTACATGCCCACAAGTACTGTCTGCTGTAGCCGAGTATTTGGATTCCCTACAAGCGGTAGCATCCCTTGAAGTGACAAAAGAATTTGATCCACAAAATCTCTTGGATCTGTTCTCTATCTTTGCTGTCAACTTGAGCAGTCCAAACAAGGATGTCCGGATTTTAACATTGAGGATTCTATCATATTTTGTGAAAATGGACCAACGTCTAGGCACAAATGAAGAGAGACCACACAAGAGACAAAGAACAGAAGATTCTGGAGAGGAAACAGCTAAATACACTAATGTTTTGGATACCCTTCTGAGTGTTGAGTCAACTCCAATTTCAGTATCTACTAGCAGGAAAATTGCTATCTTCATTTCTCGGATACAAATGAGTATATCTTCCAAGATGGTTCATGATGATTACATAACTTCTCTCTTACATGGTCTTATTGGCATATTATACAATAGATTTAGTGATCTGTGGCCACCAACGCTGGATTGTCTTGCTGTCCTTGTTAGAAAACACAAGGAGCTTGTGTGGAGTCAGTTTGTTCAGTTTGTTGCAATTCACCAATCAAAAGGTTTGACTGTGAAAAATCTGGAGAAGCTGGAAGCTGCAACCCAACCACAGTCTATTTTTGACTGCTTCAGCTTTTATCTTGCTACGGACTTTGATTGCACACCGGTTGAGACCATGGCTACCTTGTTGCTTCAATCCCTTCAAAGGATTCCTGATGTTGCTGAGTCCCGATCTCGACATCTTATACCACTATTTCTAAAATTTATGGGCTATGAATATGATGATGGCAGCATCTTTAGTGCTGATTCATATATGCCTGAAAAATGTAAAGGCAAACAATGGAAGGCGATTCTAAAAGAATGGTTGAACTTATTGAAGTTAATGCACAATGCACGGTCGTTATATCAGAGCAAGGTTCTCCAGGAAGTACTAACTACAAGGGTTCTTGATGACAGTGATCCTGACATACAAGCAAAAGCACTGGATTGCCTATTGAACTGGAAGGATGAATTCTTGACCCCATATAGTCAAAACATTAAAAATCTGATTGACATTAAAACTCTTCGTGAAGAGATGACCACATGGGCAGTTTCACATGACTCCTTGTCAATTCTGAAAGATCATAGAAGTCGTGTTGTTCCTCTGGTTATCCGTGTGTTGACACCGAAAGTAAGGAAGTTGAAGCTACTTGGTTCTCGCAAGCACGCAGGTGTCAGTCATCGAAAGGCAATTCTTCGTTTCCTTTTGCAGTTTGATTCAAATGAACTTCAGCTCTTTTTCTCGTTACTTCTGAAGTCCTTGATCCCTGGCAGCCTCCAGCTTAAAATATTTGGTTCTCAGTCTGACAACCCACTTGGAAATGTCTCTGACATTATTGGAACTTCAACAGAAATTTGTATAGAGAACTTTACATGGAAAAAGGCAAATGGTTTTCTTCATTTGGTCGAAGAAATTTTTGGTACTTTTGATATGGCACACATAAGTCCATTCCTTAATGTTTTATTAATCATTGTTGCTCGTTTGCTGGAGAGTTGCATGCGGAATATCAGAAGTGCTAGTGATGGGAAATATGGTTGCAATCAATCAAATGACCATGATGATGGCGGCCTGGCAAATGTTGAAGTGGGTAATTCTGCAAATATGAATGAATGCCCTAAAGAAATCCATGGAGCAGACCATACAGAGGCAGTGTCGATCAAGCAGTTGAAGCAGTTGGAGTTGAAGCAGTTGAAGGAGTTGAAGCAGTTGAAGGATCTGAGGTCTTTGTGTATTAAAATTGTCTTCTCAGCACTTAGTCACTATGAAAGTCATGACTTTGGAGAAAACTTCTGGAATATTTTTTTCTCTTCAGTGAAACCTCTGGTTGACTGCTTCACACAAGAAGCTTCAAGTAGTGAGAAGCCAAGTTCATTATTTGCTTGCTTCATGGCTATGAGTCGGAGCCCAACATTAGCACCACTACTGGAGTCAAATAATCTTGTACCAGCTATTTTTTCTATTTTAACTGTGAAGACAGCTTCGGGATCCATCACCTCTTATGCACTTGAGTTCATTGAGAATCTATTGAGGTTGGATATTGATTTGGAGCAGCAAGATGACAATTCAGTGAAGAAAATTCTTGTTCCACATATGGATGTTCTTATCCATAGTCTCCATGATTTTGTTAATCATCGCAAAGAGCTTAACAGGAAATCTGGTACATGGCTTGGGCAACGTGAACTTAGATTGTTCAAATTATTGCTAAATTACATCACAGACGAAGCTGCAGAGAATTTCATAGACCTTATTCTTCCTTTTTTCAGTAAGAAGGATTTGAACTCTGATGAGTGTTTGGAAGCACTACGTGTTGTGAGGGGAATAGTTCCAAATCTAAAATGCAAGGTACCTGCAAAAGTTCTAAATGCACTGAACCCATTACTTGCGACTGTTGGATTGGAACAGCGGCTATGCATCTGTGATATTTATGATGGGCTGTCATTGCATGAATCTTCAATGTCATTTATGGCTGGGTTAATACGAGATCTGAATGCAGTTTCGACATCAGAACTTGGTGAACTAGATTATGACACAAGACTTAATGCCTATGACAAGGTTAACCCACAGTTGTTTCTTGGCCTGACAGAAGAGCATGTGGGCGCCATACTATCTCATTGCGTGTATGATATGTCATCTGAAGAGTTGATTTTTCGTCAAAGTGCATCCAGGGCCCTGCAAGCTTTTCTGGATTTTTCTGCCTCAGTTATGAATAATGATGAGTCCAAGTACTCTATTGAAACTGCTGATGTATCTGGAGAGAACAACACCAGAAACATTTGCACAAGGAACTGTATTCAGAAGATACTAGAAAAAACTTACCTGCACAATATGGGAGTAGCAATGGCTAAAGATGTATCAATTCAAAAGGAATGGATTATTTTACTTCGGGAGATGGTCTTCAATTTTAATCATTTAGCATCCTTAAGCTCATTTAGGCCTCTCTGTAAAGAGGATATGGAAGAGGATTTTTTCCACAACATAACTCATTTACAGGCAGGTAAAAGATCAAAAGCATTGTCACTTTTCAGACAGGGAATCAAGGAAAACAACTTTTCGGAGGATATCACTATGAAAGTGTTTGTTCCACTATTTTTCAATATGTTTTCTGACGTAAAAGCTGGGAAGGGTGAACAAGTCAGAGATGTATGTTTGGATACGCTATCTGCTGTCGCCGCCAATGTGCAATGGGAGCACTATAGAACAATATTGACGAGATGCTTCCGAGAATTGAGCCTTAAGCCTGATAAGCAGAAGGTCATATTGAGGTTGATTTGCTCAGTGTTAGACGCGTTCCACTTCATGAAGCCTGCAAAAGATGCCTTGGGAGATTCTGATGCAACAAGTGAAGATACTGATTCTTCAATTACATTCTCTTTAACTGCAGTCTCTTCTGATAAGCAAAACTACCTTCGAAAGGTAGTGTTTCCACAGGTTCAAAAGTTGTTGGGGGCAGATCCAGAGAGAGTTAATGTCAACATAAACCTGGTAGCACTGAAAATACTTAAGTTGCTACCTGTGGATTATTTTGAGGCACAACTTTCGAGCATCATTCATCGAATCTGTAACTTCCTCAAGAATCGTCTTGAAAGCATACGTGATGAAGCTAGGTCTGCTTTAGCTGCTTCTCTGAAGGAACTTGGGATTGGGTATTTGCAGTTTGTGGTCAAGATATTGAGAGCTATACTGAAAAGGGGCTTTGAGTTACATGTTCTGGGCTACACACTTCATTATTTGTTGTCAAAAAATATAACTGCTGATATGAATGGTAAGCTTGACTACTGTTTGGAAGATCTGTTGGCAGTTGTTCACAGTGATTTATTTGGAGATGTTGCTGAACAAAAGGAAGTTGAAAAGATTGCCTCCAAAATGAAAGAGACAAAGAAGAGAATGTCATTTGAGACTCTTAAGCTGATTGCTCAAAGTATTACATTTAGGCAACATTTGCTGAAGAAGCTAATCTCACCTGTTTCTTCACATCTTCAGAAGCAACTTACTCCGAAGTTGAAAACACGACTTGAGATGATGCTGCACAATATAGCCTTAGGGATTGAGTGCAATCCATCTACTGAAACATCAAACTTATTTACTGTTGTGTATTGGCTTATTAAGGATACTACTACAGGAAGTGAGTCTGAAAGCAAAGAGAATACACAATCCGGTCCTGGTCGAGGGAGTTCTGTAGGATTAAACTTCCCTGGCCTTGGTGAGAGTGGATCACAAAATTCTTATATACTTACCAAGTTTGCACTTGACTTGCTGCGTAATCGTCTGAAGAGCATCAAACTAGATAAGGAAGATGAGCAGCTCCTAAAGATGTTGGATCCCTTTGTAGACCTTTTGGGAGAATGTCTGAATTCCAAATATGAAAGTGTCCTCTCAGTTGCTTTTAGGTGTCTTGCCTTATTGGTGAAGCTTCCTTTGCCATCTCTCAGGGACAATGCAAATATTATAAAAAATGTGCTTATGGACATTGCACAGAGAGCTGGAAACTCCAATGGTCATTTAGTCACATCTTGTTTGAAGCTACTTGCTGATCTACTTAGAGGATTCAGGATTTCACTTTCAGATAATCAGCTCCAGATGCTTGTCCATACTCCTATGTTTGTTGATCTTCAGACAAATCCTTCCCCTGTTGCACTATCACTTCTGAAGGCAATAGTCAGGCGAAAGTTGGTTACCCATGAAATTTATGATATTGTAGTTAAGATAGGAGAGTTGATGGTAACAACGCTAACTGAATCTATACGGCAGCAATGCATTCAAATTCTGCTACAATTTTTTCTGAACTACCCACTTTCTGAGAAGCGCTTACAGCAACATATTGACTTTTTCTTGGCGAACTTAAGCTACGAGCATCCTTCAGGAAGAGAAGCTGTGCTTGAAATGCTCCATGACATTCTTACAAGATTTCCCCAGAGGATTATTGATGATCAGGGTCAAACTTTTTTTCTTCATCTTGTGGTTGCTTTAGCGAATGAACAGCATCAGAATGTGTCTTCAATGATCCTTAGAGCAATCAAAAAGCTGTTAGAACGCATTGGTGATCAGGGAAAGAGCTACATTTTTGAGTATTCGCTTTCATGGTACACTGGTGAAAAACAGAGTTTGTGGAGTGCTTCAGCTCAGGTCATTGGTTTACTTGTTGACGATCATACATTACGAACGGGCAAACACCTTAAAAGTATTCTGGCTGTTGCTAAAAAAATAATGGAATCATCTGCTGTTGCTTCTGGAATATTACGATCAGGCTTATCTGATGAAACTGTCCTGCCACTGTGGAAGGAGGCTTACCACTCTGTTGCCATGATGGAGAGGTTACTTCTTCGCTTTCCAGAGTTATATTTTGAGCAGAACATGGAGGAATTATGGATAATAGTATGCAAGTTGCTGATCCATCCTCATTCGATGTTGCGTATTATTTCAAGCTCTCTGGTAGCATCGTATTTTGCTACAGTTGAGAAGAGGAAACGTGAGCAGAAATCGGTTGCTACATCATGGTTGCTAGTTCAACCAAGCAGGCTATTCATAATAGCTGTTTCTTTCTTGAAACAACTGAGAACTGAACTTAGTGATACTACAGCAAATAATCTGATCGTACAGAATCTTGCATATTCGATCTGCAACCTGCATATGTCAATTAGGCAATCGACCTCGACACATCAGTTTTGGTCTAGCGTTAGTTCTCATCATGGTGCCTTCCTTGAGGGTTTTGAATTGCTTGGTTCAAGAAAAGTAAAGAACATGTTTCTTCTTTGTACTTCAACAACTACTGATGTATCTGTATCAAGCCTTGACAGTAGTGAAGAGCCTACATCTTTGTTAGTTTCTTCAATCCTAAAGAGGATGGGTAAAATTGCAATGCAGATGCAGGATACACAGACAAAGATCGTGTTCAATTGCTTCCGCATGATTTCATCAGCTCTTGGTTCTGAAGAATCACTAACCTATGCTGATCACTTCTTGGCTCCATTGTATAAAGTTTCTGAAGGATTTTCTGGGAAAGTTGTTAGTGATGAAGTCAAGCAACTGGCTGAGGGGGTGCGGGACAAGTTACGTGATCTGATTGGTTCCGAGAAATTTGTTGAAGTCTACCAGAGTGTTAGGAAGGGCCTGAAATATAAGCGGGACAGTAGAAAGCAGGCGCAGAAGGTTATTGCAGCCGTGGACCCGGAGCGGCATGCCAAGCGAAAGCAGCGCATGGCAGCCAAGCACCGGGAGCATAAGAGGAGGAAGATAATGGCAATGAAGATGGGCAGGTGGATGAGGTAG
Protein:  
MATPSHAAVKCLNTCASSRKRFSFKTFSQRVEEIDIDVYRSLHAVKAEPSSGSSFFLDALMEWRELNTAEDFISFYEEMIPLVQTLPQIVLHREKLFSALLLRVNMSARLSLEPILMLITALSRDILEDFLPFLGRHANGILALLNDGGDRDPEVLEQVFTSWSYIMMYLQKYLVKDIVQILRITAALRYYPKDYVREFMAESVSFLLRNAPNNQLTQGLMKFLFEAAKKSSPVRIDGVISLLLHVMKGTSTKLHSRAGKVLKFLLSKSTFTTIHDKFPTGTSTVHEVMTGLIQRLCDEVDPKELPLIYTCLFEEINDCLKDGCLEHLKCLIDFLSFALHKNQSNVFDKVKIIELVELLVSRYVLPGNNIVEAASSEVLGSILDFLLCVLDVPIISGNLSIVSPFYVPVFELTNLSVIVFIKKLLAKGPQITQYFESQILSAMCNFLSSSPEEVLFILLNFFKGSQKQIILHSTDANHLDSVEKVCKFCESKFSFWIEFLDDTVNISNQSSNQISEKEAAILWGSICCYPYINGVRQDGLSLLKKLICNFDRLLEVGEENVNGLPMTTWRGLIGAALSSYCELLLVNTNINSELSFFISLAKSHSTCPQVLSAVAEYLDSLQAVASLEVTKEFDPQNLLDLFSIFAVNLSSPNKDVRILTLRILSYFVKMDQRLGTNEERPHKRQRTEDSGEETAKYTNVLDTLLSVESTPISVSTSRKIAIFISRIQMSISSKMVHDDYITSLLHGLIGILYNRFSDLWPPTLDCLAVLVRKHKELVWSQFVQFVAIHQSKGLTVKNLEKLEAATQPQSIFDCFSFYLATDFDCTPVETMATLLLQSLQRIPDVAESRSRHLIPLFLKFMGYEYDDGSIFSADSYMPEKCKGKQWKAILKEWLNLLKLMHNARSLYQSKVLQEVLTTRVLDDSDPDIQAKALDCLLNWKDEFLTPYSQNIKNLIDIKTLREEMTTWAVSHDSLSILKDHRSRVVPLVIRVLTPKVRKLKLLGSRKHAGVSHRKAILRFLLQFDSNELQLFFSLLLKSLIPGSLQLKIFGSQSDNPLGNVSDIIGTSTEICIENFTWKKANGFLHLVEEIFGTFDMAHISPFLNVLLIIVARLLESCMRNIRSASDGKYGCNQSNDHDDGGLANVEVGNSANMNECPKEIHGADHTEAVSIKQLKQLELKQLKELKQLKDLRSLCIKIVFSALSHYESHDFGENFWNIFFSSVKPLVDCFTQEASSSEKPSSLFACFMAMSRSPTLAPLLESNNLVPAIFSILTVKTASGSITSYALEFIENLLRLDIDLEQQDDNSVKKILVPHMDVLIHSLHDFVNHRKELNRKSGTWLGQRELRLFKLLLNYITDEAAENFIDLILPFFSKKDLNSDECLEALRVVRGIVPNLKCKVPAKVLNALNPLLATVGLEQRLCICDIYDGLSLHESSMSFMAGLIRDLNAVSTSELGELDYDTRLNAYDKVNPQLFLGLTEEHVGAILSHCVYDMSSEELIFRQSASRALQAFLDFSASVMNNDESKYSIETADVSGENNTRNICTRNCIQKILEKTYLHNMGVAMAKDVSIQKEWIILLREMVFNFNHLASLSSFRPLCKEDMEEDFFHNITHLQAGKRSKALSLFRQGIKENNFSEDITMKVFVPLFFNMFSDVKAGKGEQVRDVCLDTLSAVAANVQWEHYRTILTRCFRELSLKPDKQKVILRLICSVLDAFHFMKPAKDALGDSDATSEDTDSSITFSLTAVSSDKQNYLRKVVFPQVQKLLGADPERVNVNINLVALKILKLLPVDYFEAQLSSIIHRICNFLKNRLESIRDEARSALAASLKELGIGYLQFVVKILRAILKRGFELHVLGYTLHYLLSKNITADMNGKLDYCLEDLLAVVHSDLFGDVAEQKEVEKIASKMKETKKRMSFETLKLIAQSITFRQHLLKKLISPVSSHLQKQLTPKLKTRLEMMLHNIALGIECNPSTETSNLFTVVYWLIKDTTTGSESESKENTQSGPGRGSSVGLNFPGLGESGSQNSYILTKFALDLLRNRLKSIKLDKEDEQLLKMLDPFVDLLGECLNSKYESVLSVAFRCLALLVKLPLPSLRDNANIIKNVLMDIAQRAGNSNGHLVTSCLKLLADLLRGFRISLSDNQLQMLVHTPMFVDLQTNPSPVALSLLKAIVRRKLVTHEIYDIVVKIGELMVTTLTESIRQQCIQILLQFFLNYPLSEKRLQQHIDFFLANLSYEHPSGREAVLEMLHDILTRFPQRIIDDQGQTFFLHLVVALANEQHQNVSSMILRAIKKLLERIGDQGKSYIFEYSLSWYTGEKQSLWSASAQVIGLLVDDHTLRTGKHLKSILAVAKKIMESSAVASGILRSGLSDETVLPLWKEAYHSVAMMERLLLRFPELYFEQNMEELWIIVCKLLIHPHSMLRIISSSLVASYFATVEKRKREQKSVATSWLLVQPSRLFIIAVSFLKQLRTELSDTTANNLIVQNLAYSICNLHMSIRQSTSTHQFWSSVSSHHGAFLEGFELLGSRKVKNMFLLCTSTTTDVSVSSLDSSEEPTSLLVSSILKRMGKIAMQMQDTQTKIVFNCFRMISSALGSEESLTYADHFLAPLYKVSEGFSGKVVSDEVKQLAEGVRDKLRDLIGSEKFVEVYQSVRKGLKYKRDSRKQAQKVIAAVDPERHAKRKQRMAAKHREHKRRKIMAMKMGRWMR