CDS
Accession Number | TCMCG066C20351 |
gbkey | CDS |
Protein Id | XP_034596476.1 |
Location | complement(join(31339211..31339467,31339627..31339759,31339839..31340357,31341230..31341463,31341630..31341909,31341981..31343767,31345139..31345204,31345277..31345402,31345482..31345880,31345959..31346140,31346268..31346401,31347270..31347772,31348037..31348519,31348934..31349195,31349278..31349418,31349516..31349702,31350318..31350648,31350720..31350948,31351048..31351240,31351333..31351685,31351779..31351853,31351967..31352171,31352266..31352466,31352861..31353046,31353404..31353510,31353706..31353779,31353858..31353936,31354246..31354290,31355143..31355300,31357128..31357250,31357331..31357399)) |
Gene | LOC117857748 |
GeneID | 117857748 |
Organism | Setaria viridis |
Protein
Length | 2706aa |
Molecule type | protein |
Topology | linear |
Data_file_division | PLN |
dblink | BioProject:PRJNA633601 |
db_source | XM_034740585.1 |
Definition | small subunit processome component 20 homolog [Setaria viridis] |
EGGNOG-MAPPER Annotation
COG_category | V |
Description | Down-regulated in metastasis |
KEGG_TC | - |
KEGG_Module | - |
KEGG_Reaction | - |
KEGG_rclass | - |
BRITE |
ko00000
[VIEW IN KEGG] ko03009 [VIEW IN KEGG] |
KEGG_ko |
ko:K14772
[VIEW IN KEGG] |
EC | - |
KEGG_Pathway | - |
GOs | - |
Sequence
CDS: ATGGCGACCCCGTCGCACGCGGCGGTGAAGTGCCTCAACACGTGCGCGTCCAGCCGCAAGCGCTTCTCGTTCAAGACCTTCTCGCAGCGGGTGGAGGAGATCGACATCGATGTGTACCGCAGCCTACACGCTGTGAAGGCCGAGCCCTCCAGCGGCTCGTCCTTCTTCCTCGACGCCCTCATGGAGTGGAGGGAGCTTAATACTGCAGAGGATTTTATCTCATTTTATGAGGAGATGATACCATTGGTACAGACCCTACCTCAAATTGTATTGCACCGTGAAAAGCTCTTTTCTGCGCTTCTACTGAGAGTGAACATGAGTGCGAGATTGTCCCTGGAGCCAATACTCATGTTGATCACAGCTCTCTCCAGGGACATTCTAGAAGATTTTTTGCCCTTTCTAGGAAGACATGCTAATGGCATTTTAGCTCTCCTTAATGATGGTGGTGATCGTGATCCTGAAGTCCTGGAACAGGTCTTCACATCTTGGTCATATATAATGATGTACTTGCAAAAATATCTTGTGAAAGATATTGTCCAAATTCTAAGGATCACAGCAGCGTTGAGATACTACCCAAAGGATTATGTTAGAGAATTTATGGCTGAATCAGTTTCATTTCTGCTGAGGAATGCACCTAATAATCAGCTAACACAAGGTTTAATGAAGTTTCTATTTGAGGCTGCTAAAAAATCATCACCTGTACGGATAGACGGGGTGATATCTTTGTTGTTGCATGTCATGAAAGGAACTTCTACAAAGCTCCACTCAAGAGCTGGGAAAGTCTTGAAGTTCTTGTTGAGCAAGTCAACTTTTACCACTATCCATGATAAATTCCCTACTGGGACTTCTACTGTTCATGAGGTCATGACGGGGCTGATTCAAAGATTATGTGATGAAGTGGATCCAAAAGAATTGCCGTTGATATATACTTGTCTATTTGAAGAAATCAACGACTGCCTTAAGGATGGCTGTTTGGAGCATTTGAAGTGCTTGATTGATTTTCTTTCATTTGCTTTACATAAGAACCAAAGCAATGTGTTCGATAAGGTGAAGATAATTGAACTTGTTGAGTTGCTGGTTAGTAGATATGTGTTACCTGGTAACAACATAGTAGAAGCTGCTTCATCTGAGGTGCTGGGAAGTATTTTGGACTTTCTGCTGTGTGTTCTGGATGTTCCAATCATTTCTGGCAATTTATCAATCGTATCACCCTTTTATGTCCCAGTGTTTGAACTAACGAATCTGAGTGTGATTGTCTTTATAAAGAAACTTTTGGCAAAAGGTCCACAAATTACACAATATTTTGAAAGCCAGATATTGAGTGCAATGTGCAATTTTCTTTCAAGTTCACCGGAAGAAGTTCTCTTTATCCTTCTGAATTTCTTTAAAGGATCACAGAAGCAAATAATTCTTCATAGCACTGATGCAAACCATCTGGATTCAGTGGAGAAAGTGTGCAAGTTCTGTGAATCGAAATTCTCTTTCTGGATAGAATTCTTAGATGATACAGTCAACATTTCCAATCAATCTAGTAATCAGATCAGTGAAAAGGAAGCTGCTATACTGTGGGGATCTATTTGTTGCTATCCTTACATAAATGGTGTACGTCAAGATGGTTTGTCACTGTTGAAGAAGTTAATCTGCAACTTCGATCGGTTGCTTGAAGTGGGAGAAGAGAACGTGAATGGTCTTCCAATGACTACCTGGAGAGGTTTAATTGGTGCAGCATTGTCATCATACTGTGAACTTTTGCTGGTTAACACAAATATAAATTCAGAATTAAGTTTTTTCATATCACTTGCCAAGAGTCACAGTACATGCCCACAAGTACTGTCTGCTGTAGCCGAGTATTTGGATTCCCTACAAGCGGTAGCATCCCTTGAAGTGACAAAAGAATTTGATCCACAAAATCTCTTGGATCTGTTCTCTATCTTTGCTGTCAACTTGAGCAGTCCAAACAAGGATGTCCGGATTTTAACATTGAGGATTCTATCATATTTTGTGAAAATGGACCAACGTCTAGGCACAAATGAAGAGAGACCACACAAGAGACAAAGAACAGAAGATTCTGGAGAGGAAACAGCTAAATACACTAATGTTTTGGATACCCTTCTGAGTGTTGAGTCAACTCCAATTTCAGTATCTACTAGCAGGAAAATTGCTATCTTCATTTCTCGGATACAAATGAGTATATCTTCCAAGATGGTTCATGATGATTACATAACTTCTCTCTTACATGGTCTTATTGGCATATTATACAATAGATTTAGTGATCTGTGGCCACCAACGCTGGATTGTCTTGCTGTCCTTGTTAGAAAACACAAGGAGCTTGTGTGGAGTCAGTTTGTTCAGTTTGTTGCAATTCACCAATCAAAAGGTTTGACTGTGAAAAATCTGGAGAAGCTGGAAGCTGCAACCCAACCACAGTCTATTTTTGACTGCTTCAGCTTTTATCTTGCTACGGACTTTGATTGCACACCGGTTGAGACCATGGCTACCTTGTTGCTTCAATCCCTTCAAAGGATTCCTGATGTTGCTGAGTCCCGATCTCGACATCTTATACCACTATTTCTAAAATTTATGGGCTATGAATATGATGATGGCAGCATCTTTAGTGCTGATTCATATATGCCTGAAAAATGTAAAGGCAAACAATGGAAGGCGATTCTAAAAGAATGGTTGAACTTATTGAAGTTAATGCACAATGCACGGTCGTTATATCAGAGCAAGGTTCTCCAGGAAGTACTAACTACAAGGGTTCTTGATGACAGTGATCCTGACATACAAGCAAAAGCACTGGATTGCCTATTGAACTGGAAGGATGAATTCTTGACCCCATATAGTCAAAACATTAAAAATCTGATTGACATTAAAACTCTTCGTGAAGAGATGACCACATGGGCAGTTTCACATGACTCCTTGTCAATTCTGAAAGATCATAGAAGTCGTGTTGTTCCTCTGGTTATCCGTGTGTTGACACCGAAAGTAAGGAAGTTGAAGCTACTTGGTTCTCGCAAGCACGCAGGTGTCAGTCATCGAAAGGCAATTCTTCGTTTCCTTTTGCAGTTTGATTCAAATGAACTTCAGCTCTTTTTCTCGTTACTTCTGAAGTCCTTGATCCCTGGCAGCCTCCAGCTTAAAATATTTGGTTCTCAGTCTGACAACCCACTTGGAAATGTCTCTGACATTATTGGAACTTCAACAGAAATTTGTATAGAGAACTTTACATGGAAAAAGGCAAATGGTTTTCTTCATTTGGTCGAAGAAATTTTTGGTACTTTTGATATGGCACACATAAGTCCATTCCTTAATGTTTTATTAATCATTGTTGCTCGTTTGCTGGAGAGTTGCATGCGGAATATCAGAAGTGCTAGTGATGGGAAATATGGTTGCAATCAATCAAATGACCATGATGATGGCGGCCTGGCAAATGTTGAAGTGGGTAATTCTGCAAATATGAATGAATGCCCTAAAGAAATCCATGGAGCAGACCATACAGAGGCAGTGTCGATCAAGCAGTTGAAGCAGTTGGAGTTGAAGCAGTTGAAGGAGTTGAAGCAGTTGAAGGATCTGAGGTCTTTGTGTATTAAAATTGTCTTCTCAGCACTTAGTCACTATGAAAGTCATGACTTTGGAGAAAACTTCTGGAATATTTTTTTCTCTTCAGTGAAACCTCTGGTTGACTGCTTCACACAAGAAGCTTCAAGTAGTGAGAAGCCAAGTTCATTATTTGCTTGCTTCATGGCTATGAGTCGGAGCCCAACATTAGCACCACTACTGGAGTCAAATAATCTTGTACCAGCTATTTTTTCTATTTTAACTGTGAAGACAGCTTCGGGATCCATCACCTCTTATGCACTTGAGTTCATTGAGAATCTATTGAGGTTGGATATTGATTTGGAGCAGCAAGATGACAATTCAGTGAAGAAAATTCTTGTTCCACATATGGATGTTCTTATCCATAGTCTCCATGATTTTGTTAATCATCGCAAAGAGCTTAACAGGAAATCTGGTACATGGCTTGGGCAACGTGAACTTAGATTGTTCAAATTATTGCTAAATTACATCACAGACGAAGCTGCAGAGAATTTCATAGACCTTATTCTTCCTTTTTTCAGTAAGAAGGATTTGAACTCTGATGAGTGTTTGGAAGCACTACGTGTTGTGAGGGGAATAGTTCCAAATCTAAAATGCAAGGTACCTGCAAAAGTTCTAAATGCACTGAACCCATTACTTGCGACTGTTGGATTGGAACAGCGGCTATGCATCTGTGATATTTATGATGGGCTGTCATTGCATGAATCTTCAATGTCATTTATGGCTGGGTTAATACGAGATCTGAATGCAGTTTCGACATCAGAACTTGGTGAACTAGATTATGACACAAGACTTAATGCCTATGACAAGGTTAACCCACAGTTGTTTCTTGGCCTGACAGAAGAGCATGTGGGCGCCATACTATCTCATTGCGTGTATGATATGTCATCTGAAGAGTTGATTTTTCGTCAAAGTGCATCCAGGGCCCTGCAAGCTTTTCTGGATTTTTCTGCCTCAGTTATGAATAATGATGAGTCCAAGTACTCTATTGAAACTGCTGATGTATCTGGAGAGAACAACACCAGAAACATTTGCACAAGGAACTGTATTCAGAAGATACTAGAAAAAACTTACCTGCACAATATGGGAGTAGCAATGGCTAAAGATGTATCAATTCAAAAGGAATGGATTATTTTACTTCGGGAGATGGTCTTCAATTTTAATCATTTAGCATCCTTAAGCTCATTTAGGCCTCTCTGTAAAGAGGATATGGAAGAGGATTTTTTCCACAACATAACTCATTTACAGGCAGGTAAAAGATCAAAAGCATTGTCACTTTTCAGACAGGGAATCAAGGAAAACAACTTTTCGGAGGATATCACTATGAAAGTGTTTGTTCCACTATTTTTCAATATGTTTTCTGACGTAAAAGCTGGGAAGGGTGAACAAGTCAGAGATGTATGTTTGGATACGCTATCTGCTGTCGCCGCCAATGTGCAATGGGAGCACTATAGAACAATATTGACGAGATGCTTCCGAGAATTGAGCCTTAAGCCTGATAAGCAGAAGGTCATATTGAGGTTGATTTGCTCAGTGTTAGACGCGTTCCACTTCATGAAGCCTGCAAAAGATGCCTTGGGAGATTCTGATGCAACAAGTGAAGATACTGATTCTTCAATTACATTCTCTTTAACTGCAGTCTCTTCTGATAAGCAAAACTACCTTCGAAAGGTAGTGTTTCCACAGGTTCAAAAGTTGTTGGGGGCAGATCCAGAGAGAGTTAATGTCAACATAAACCTGGTAGCACTGAAAATACTTAAGTTGCTACCTGTGGATTATTTTGAGGCACAACTTTCGAGCATCATTCATCGAATCTGTAACTTCCTCAAGAATCGTCTTGAAAGCATACGTGATGAAGCTAGGTCTGCTTTAGCTGCTTCTCTGAAGGAACTTGGGATTGGGTATTTGCAGTTTGTGGTCAAGATATTGAGAGCTATACTGAAAAGGGGCTTTGAGTTACATGTTCTGGGCTACACACTTCATTATTTGTTGTCAAAAAATATAACTGCTGATATGAATGGTAAGCTTGACTACTGTTTGGAAGATCTGTTGGCAGTTGTTCACAGTGATTTATTTGGAGATGTTGCTGAACAAAAGGAAGTTGAAAAGATTGCCTCCAAAATGAAAGAGACAAAGAAGAGAATGTCATTTGAGACTCTTAAGCTGATTGCTCAAAGTATTACATTTAGGCAACATTTGCTGAAGAAGCTAATCTCACCTGTTTCTTCACATCTTCAGAAGCAACTTACTCCGAAGTTGAAAACACGACTTGAGATGATGCTGCACAATATAGCCTTAGGGATTGAGTGCAATCCATCTACTGAAACATCAAACTTATTTACTGTTGTGTATTGGCTTATTAAGGATACTACTACAGGAAGTGAGTCTGAAAGCAAAGAGAATACACAATCCGGTCCTGGTCGAGGGAGTTCTGTAGGATTAAACTTCCCTGGCCTTGGTGAGAGTGGATCACAAAATTCTTATATACTTACCAAGTTTGCACTTGACTTGCTGCGTAATCGTCTGAAGAGCATCAAACTAGATAAGGAAGATGAGCAGCTCCTAAAGATGTTGGATCCCTTTGTAGACCTTTTGGGAGAATGTCTGAATTCCAAATATGAAAGTGTCCTCTCAGTTGCTTTTAGGTGTCTTGCCTTATTGGTGAAGCTTCCTTTGCCATCTCTCAGGGACAATGCAAATATTATAAAAAATGTGCTTATGGACATTGCACAGAGAGCTGGAAACTCCAATGGTCATTTAGTCACATCTTGTTTGAAGCTACTTGCTGATCTACTTAGAGGATTCAGGATTTCACTTTCAGATAATCAGCTCCAGATGCTTGTCCATACTCCTATGTTTGTTGATCTTCAGACAAATCCTTCCCCTGTTGCACTATCACTTCTGAAGGCAATAGTCAGGCGAAAGTTGGTTACCCATGAAATTTATGATATTGTAGTTAAGATAGGAGAGTTGATGGTAACAACGCTAACTGAATCTATACGGCAGCAATGCATTCAAATTCTGCTACAATTTTTTCTGAACTACCCACTTTCTGAGAAGCGCTTACAGCAACATATTGACTTTTTCTTGGCGAACTTAAGCTACGAGCATCCTTCAGGAAGAGAAGCTGTGCTTGAAATGCTCCATGACATTCTTACAAGATTTCCCCAGAGGATTATTGATGATCAGGGTCAAACTTTTTTTCTTCATCTTGTGGTTGCTTTAGCGAATGAACAGCATCAGAATGTGTCTTCAATGATCCTTAGAGCAATCAAAAAGCTGTTAGAACGCATTGGTGATCAGGGAAAGAGCTACATTTTTGAGTATTCGCTTTCATGGTACACTGGTGAAAAACAGAGTTTGTGGAGTGCTTCAGCTCAGGTCATTGGTTTACTTGTTGACGATCATACATTACGAACGGGCAAACACCTTAAAAGTATTCTGGCTGTTGCTAAAAAAATAATGGAATCATCTGCTGTTGCTTCTGGAATATTACGATCAGGCTTATCTGATGAAACTGTCCTGCCACTGTGGAAGGAGGCTTACCACTCTGTTGCCATGATGGAGAGGTTACTTCTTCGCTTTCCAGAGTTATATTTTGAGCAGAACATGGAGGAATTATGGATAATAGTATGCAAGTTGCTGATCCATCCTCATTCGATGTTGCGTATTATTTCAAGCTCTCTGGTAGCATCGTATTTTGCTACAGTTGAGAAGAGGAAACGTGAGCAGAAATCGGTTGCTACATCATGGTTGCTAGTTCAACCAAGCAGGCTATTCATAATAGCTGTTTCTTTCTTGAAACAACTGAGAACTGAACTTAGTGATACTACAGCAAATAATCTGATCGTACAGAATCTTGCATATTCGATCTGCAACCTGCATATGTCAATTAGGCAATCGACCTCGACACATCAGTTTTGGTCTAGCGTTAGTTCTCATCATGGTGCCTTCCTTGAGGGTTTTGAATTGCTTGGTTCAAGAAAAGTAAAGAACATGTTTCTTCTTTGTACTTCAACAACTACTGATGTATCTGTATCAAGCCTTGACAGTAGTGAAGAGCCTACATCTTTGTTAGTTTCTTCAATCCTAAAGAGGATGGGTAAAATTGCAATGCAGATGCAGGATACACAGACAAAGATCGTGTTCAATTGCTTCCGCATGATTTCATCAGCTCTTGGTTCTGAAGAATCACTAACCTATGCTGATCACTTCTTGGCTCCATTGTATAAAGTTTCTGAAGGATTTTCTGGGAAAGTTGTTAGTGATGAAGTCAAGCAACTGGCTGAGGGGGTGCGGGACAAGTTACGTGATCTGATTGGTTCCGAGAAATTTGTTGAAGTCTACCAGAGTGTTAGGAAGGGCCTGAAATATAAGCGGGACAGTAGAAAGCAGGCGCAGAAGGTTATTGCAGCCGTGGACCCGGAGCGGCATGCCAAGCGAAAGCAGCGCATGGCAGCCAAGCACCGGGAGCATAAGAGGAGGAAGATAATGGCAATGAAGATGGGCAGGTGGATGAGGTAG |
Protein: MATPSHAAVKCLNTCASSRKRFSFKTFSQRVEEIDIDVYRSLHAVKAEPSSGSSFFLDALMEWRELNTAEDFISFYEEMIPLVQTLPQIVLHREKLFSALLLRVNMSARLSLEPILMLITALSRDILEDFLPFLGRHANGILALLNDGGDRDPEVLEQVFTSWSYIMMYLQKYLVKDIVQILRITAALRYYPKDYVREFMAESVSFLLRNAPNNQLTQGLMKFLFEAAKKSSPVRIDGVISLLLHVMKGTSTKLHSRAGKVLKFLLSKSTFTTIHDKFPTGTSTVHEVMTGLIQRLCDEVDPKELPLIYTCLFEEINDCLKDGCLEHLKCLIDFLSFALHKNQSNVFDKVKIIELVELLVSRYVLPGNNIVEAASSEVLGSILDFLLCVLDVPIISGNLSIVSPFYVPVFELTNLSVIVFIKKLLAKGPQITQYFESQILSAMCNFLSSSPEEVLFILLNFFKGSQKQIILHSTDANHLDSVEKVCKFCESKFSFWIEFLDDTVNISNQSSNQISEKEAAILWGSICCYPYINGVRQDGLSLLKKLICNFDRLLEVGEENVNGLPMTTWRGLIGAALSSYCELLLVNTNINSELSFFISLAKSHSTCPQVLSAVAEYLDSLQAVASLEVTKEFDPQNLLDLFSIFAVNLSSPNKDVRILTLRILSYFVKMDQRLGTNEERPHKRQRTEDSGEETAKYTNVLDTLLSVESTPISVSTSRKIAIFISRIQMSISSKMVHDDYITSLLHGLIGILYNRFSDLWPPTLDCLAVLVRKHKELVWSQFVQFVAIHQSKGLTVKNLEKLEAATQPQSIFDCFSFYLATDFDCTPVETMATLLLQSLQRIPDVAESRSRHLIPLFLKFMGYEYDDGSIFSADSYMPEKCKGKQWKAILKEWLNLLKLMHNARSLYQSKVLQEVLTTRVLDDSDPDIQAKALDCLLNWKDEFLTPYSQNIKNLIDIKTLREEMTTWAVSHDSLSILKDHRSRVVPLVIRVLTPKVRKLKLLGSRKHAGVSHRKAILRFLLQFDSNELQLFFSLLLKSLIPGSLQLKIFGSQSDNPLGNVSDIIGTSTEICIENFTWKKANGFLHLVEEIFGTFDMAHISPFLNVLLIIVARLLESCMRNIRSASDGKYGCNQSNDHDDGGLANVEVGNSANMNECPKEIHGADHTEAVSIKQLKQLELKQLKELKQLKDLRSLCIKIVFSALSHYESHDFGENFWNIFFSSVKPLVDCFTQEASSSEKPSSLFACFMAMSRSPTLAPLLESNNLVPAIFSILTVKTASGSITSYALEFIENLLRLDIDLEQQDDNSVKKILVPHMDVLIHSLHDFVNHRKELNRKSGTWLGQRELRLFKLLLNYITDEAAENFIDLILPFFSKKDLNSDECLEALRVVRGIVPNLKCKVPAKVLNALNPLLATVGLEQRLCICDIYDGLSLHESSMSFMAGLIRDLNAVSTSELGELDYDTRLNAYDKVNPQLFLGLTEEHVGAILSHCVYDMSSEELIFRQSASRALQAFLDFSASVMNNDESKYSIETADVSGENNTRNICTRNCIQKILEKTYLHNMGVAMAKDVSIQKEWIILLREMVFNFNHLASLSSFRPLCKEDMEEDFFHNITHLQAGKRSKALSLFRQGIKENNFSEDITMKVFVPLFFNMFSDVKAGKGEQVRDVCLDTLSAVAANVQWEHYRTILTRCFRELSLKPDKQKVILRLICSVLDAFHFMKPAKDALGDSDATSEDTDSSITFSLTAVSSDKQNYLRKVVFPQVQKLLGADPERVNVNINLVALKILKLLPVDYFEAQLSSIIHRICNFLKNRLESIRDEARSALAASLKELGIGYLQFVVKILRAILKRGFELHVLGYTLHYLLSKNITADMNGKLDYCLEDLLAVVHSDLFGDVAEQKEVEKIASKMKETKKRMSFETLKLIAQSITFRQHLLKKLISPVSSHLQKQLTPKLKTRLEMMLHNIALGIECNPSTETSNLFTVVYWLIKDTTTGSESESKENTQSGPGRGSSVGLNFPGLGESGSQNSYILTKFALDLLRNRLKSIKLDKEDEQLLKMLDPFVDLLGECLNSKYESVLSVAFRCLALLVKLPLPSLRDNANIIKNVLMDIAQRAGNSNGHLVTSCLKLLADLLRGFRISLSDNQLQMLVHTPMFVDLQTNPSPVALSLLKAIVRRKLVTHEIYDIVVKIGELMVTTLTESIRQQCIQILLQFFLNYPLSEKRLQQHIDFFLANLSYEHPSGREAVLEMLHDILTRFPQRIIDDQGQTFFLHLVVALANEQHQNVSSMILRAIKKLLERIGDQGKSYIFEYSLSWYTGEKQSLWSASAQVIGLLVDDHTLRTGKHLKSILAVAKKIMESSAVASGILRSGLSDETVLPLWKEAYHSVAMMERLLLRFPELYFEQNMEELWIIVCKLLIHPHSMLRIISSSLVASYFATVEKRKREQKSVATSWLLVQPSRLFIIAVSFLKQLRTELSDTTANNLIVQNLAYSICNLHMSIRQSTSTHQFWSSVSSHHGAFLEGFELLGSRKVKNMFLLCTSTTTDVSVSSLDSSEEPTSLLVSSILKRMGKIAMQMQDTQTKIVFNCFRMISSALGSEESLTYADHFLAPLYKVSEGFSGKVVSDEVKQLAEGVRDKLRDLIGSEKFVEVYQSVRKGLKYKRDSRKQAQKVIAAVDPERHAKRKQRMAAKHREHKRRKIMAMKMGRWMR |